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quantseq 3’ mrna-seq integrated data analysis pipeline  (Lexogen GmbH)

 
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    Structured Review

    Lexogen GmbH quantseq 3’ mrna-seq integrated data analysis pipeline
    Quantseq 3’ Mrna Seq Integrated Data Analysis Pipeline, supplied by Lexogen GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/quantseq+data+analysis+pipeline/quantseq+3++mrna+seq+library+prep+kit/pm40619104-61-11-18
    Average 90 stars, based on 1 article reviews
    quantseq 3’ mrna-seq integrated data analysis pipeline - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    other:

    Article Title: Mitochondrial Kv1.3 Channels as Target for Treatment of Multiple Myeloma.
    Article Snippet: After demultiplexing, reads were subjected to the automated QuantSeq data analysis pipeline provided by Lexogen.

    Article Title: Transcriptome and proteome profiling of activated cardiac fibroblasts supports target prioritization in cardiac fibrosis
    Article Snippet: Quality assessment of raw sequences and trimming were performed on the Lexogen’s QuantSeq data analysis pipeline—Bluebee.

    Article Title: Differential expression of CD8 defines phenotypically distinct cytotoxic T cells in cancer and multiple sclerosis
    Article Snippet: The QuantSeq data analysis pipeline (Lexogen, Vienna, Austria) was used for data processing and the calculation of normalised counts.

    Article Title: CEA expression heterogeneity and plasticity confer resistance to the CEA-targeting bispecific immunotherapy antibody cibisatamab (CEA-TCB) in patient-derived colorectal cancer organoids
    Article Snippet: Alignment and gene counting were performed on the Lexogen QuantSeq data analysis pipeline on the Bluebee cloud.

    Sequencing:

    Article Title: Trained immunity of alveolar macrophages requires metabolic rewiring and type 1 interferon signaling
    Article Snippet: Subsequently, 65 bp single-end sequencing was performed by the Biomedical Sequencing Facility (BSF, Research Center for Molecular Medicine and Medical University of Vienna) on a HiSeq3000/4000 instrument (Illumina). .. Quant-seq data processing and bioinformatic analysis Raw sequencing data were processed using the QuantSeq data analysis pipeline (Lexogen) hosted on the BlueBee Genomics Platform (Bluebee), as recommended by the manufacturer. ..

    Modification:

    Article Title: In vivo transcriptional analysis of mice infected with Leishmania major unveils cellular heterogeneity and altered transcriptomic profiling at single-cell resolution
    Article Snippet: .. The raw reads were then processed according to Lexogen’s QuantSeq data analysis pipeline with slight modification. .. Briefly, residual 3’ adapters, polyA read through sequences, and low quality (Q < 20) bases were trimmed using BBTools BBDuk (version 38.52) ( https://sourceforge.net/projects/bbmap/ ).

    Article Title: HIF-α Activation Impacts Macrophage Function during Murine Leishmania major Infection
    Article Snippet: .. Next, the raw reads were processed according to Lexogen’s QuantSeq data analysis pipeline with slight modification. .. Residual 3′ adapters, polyA read-through sequences, and low-quality (Q < 20) bases were trimmed using BBTools BBDuk (version 38.52) ( https://sourceforge.net/projects/bbmap/ , accessed on 4 October 2021).



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